Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
2
pCHi-C
Assay category
113
Transcription
27
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
325
May, 2021
324
November, 2017
156
February, 2021
124
August, 2017
95
May, 2022
86
February, 2023
77
August, 2021
63
October, 2019
62
November, 2018
59
September, 2018
56
September, 2020
55
June, 2019
48
July, 2018
48
May, 2020
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
23
January, 2019
19
March, 2020
14
November, 2019
11
November, 2020
8
January, 2021
7
December, 2019
5
January, 2018
5
May, 2019
4
August, 2018
4
March, 2023
3
June, 2018
2
October, 2018
1
October, 2022
Available data
110
bam
107
tsv
106
bigWig
45
fastq
8
tagAlign
5
bed narrowPeak
2
bed bed3+
Organism
156
Homo sapiens
Biosample type
tissue
87
cell line
47
primary cell
22
in vitro differentiated cells
Organ
58
artery
58
blood vessel
58
heart
58
vasculature
32
epithelium
32
pancreas
6
connective tissue
1
liver
Project
111
AMP
45
HPAP
Genome assembly (visualization)
108
hg19
106
GRCh38
Lab
111
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
assay_title!
ATAC-seq
files.file_type!
hic
biosample_type!
tissue
BIOSAMPLE
ASSAY
156 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
Download