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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
31
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
85
October, 2019
28
June, 2019
28
May, 2019
15
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
233
bam
211
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
14
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
272
Homo sapiens
Biosample type
261
tissue
11
primary cell
Organ
787
pancreas
766
liver
659
connective tissue
485
adipose tissue
415
epithelium
343
heart
282
brain
278
kidney
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
272
AMP
Genome assembly (visualization)
209
GRCh38
153
hg19
Lab
272
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
hic
organ_slims!
vasculature
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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