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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
ChIP-seq
194
total RNA-seq
ATAC-seq
8
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
587
DNA binding
198
Transcription
8
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
127
histone modification
126
histone
119
control
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
58
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
47
October, 2019
34
August, 2021
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
2
February, 2020
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
719
bam
631
bigWig
464
fastq
444
bed narrowPeak
383
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
hic
1
csv
1
hdf5
1
vcf
Organism
808
Homo sapiens
Biosample type
399
cell line
381
tissue
15
in vitro differentiated cells
13
primary cell
Organ
787
pancreas
766
liver
659
connective tissue
485
adipose tissue
415
epithelium
343
heart
282
brain
278
kidney
187
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
20
lung
20
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
808
AMP
Genome assembly (visualization)
630
hg19
558
GRCh38
Lab
758
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
hic
BIOSAMPLE
ASSAY
808 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
1
2
1
tissue
liver
145
167
2
3
1
1
1
1
tibial nerve
35
5
2
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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