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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
12
total RNA-seq
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
38
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
67
October, 2019
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
4
February, 2020
2
May, 2022
Available data
123
bam
117
bigWig
106
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
164
Homo sapiens
Biosample type
150
tissue
14
primary cell
Organ
794
pancreas
767
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
122
hg19
103
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
files.file_type!
vcf
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
skeletal muscle tissue
22
1
4
1
1
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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