Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
157
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
157
DNA binding
88
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
95
May, 2022
76
February, 2023
56
September, 2020
48
July, 2018
47
February, 2021
47
June, 2019
47
May, 2020
43
April, 2018
42
September, 2018
40
August, 2017
31
July, 2019
20
October, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
425
bam
417
bigWig
344
fastq
258
tsv
144
bed narrowPeak
114
zippedFastqFolder
66
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
766
Homo sapiens
Biosample type
2214
tissue
766
primary cell
613
cell line
296
in vitro differentiated cells
9
stem cell
Organ
303
epithelium
248
pancreas
33
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
vein
12
liver
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
330
AMP
275
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
426
hg19
391
GRCh38
Lab
315
AMP-T2D consortium
275
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
vcf
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
766 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
10
31
1
monocyte
54
41
1
1
pancreatic beta cell
21
12
10
16
1
exocrine cell
39
+ See 87 more…
See all biosamples
Download