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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
77
DNA methylation
52
Transcription
21
DNA accessibility
Date released
95
May, 2022
23
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
Available data
3217
bam
2993
bigWig
1586
tsv
1499
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
150
Homo sapiens
Biosample type
124
primary cell
25
tissue
1
cell line
Organ
47
epithelium
47
pancreas
8
heart
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
114
HPAP
36
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
114
Klaus Kaestner, Upenn
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
150 results
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WGBS
single cell RNA-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
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