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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
ATAC-seq
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
October, 2022
Available data
3217
bam
3033
bigWig
1586
tsv
1539
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
157
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
8
csv
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
157
Homo sapiens
Biosample type
157
tissue
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
157
AMP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
assay_title!
ATAC-seq
month_released!
October, 2022
BIOSAMPLE
ASSAY
157 results
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RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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