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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
10
Transcription
1
DNA accessibility
Date released
84
February, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3073
bam
2902
bigWig
1562
tsv
1420
bed narrowPeak
1297
fastq
911
bigBed narrowPeak
398
tagAlign
242
bed broadPeak
207
bigBed broadPeak
191
bed bed3+
114
zippedFastqFolder
96
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
95
Homo sapiens
Biosample type
95
tissue
1
cell line
Organ
88
bone element
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
96
AMP
Genome assembly (visualization)
1
hg19
Lab
90
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
96 results
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RNA microarray
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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