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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
ATAC-seq
23
Hi-C
21
snATAC-seq
Assay category
52
Transcription
41
DNA methylation
23
3D chromatin structure
21
DNA accessibility
Date released
95
May, 2022
19
September, 2020
10
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3217
bam
2993
bigWig
1586
tsv
1499
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
137
Homo sapiens
Biosample type
120
primary cell
11
tissue
4
in vitro differentiated cells
2
cell line
Organ
48
pancreas
47
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
117
HPAP
19
AMP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
117
Klaus Kaestner, Upenn
16
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
137 results
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single cell RNA-seq
WGBS
Hi-C
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
chondrocytes
1
+ See 1 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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