Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
187
single cell RNA-seq
162
ChIP-seq
149
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
162
DNA binding
80
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
July, 2019
9
November, 2017
7
May, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2020
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
377
fastq
345
bam
320
bigWig
162
tsv
142
bed narrowPeak
114
zippedFastqFolder
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
649
Homo sapiens
Biosample type
2454
tissue
649
primary cell
628
cell line
310
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
275
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
373
AMP
275
HPAP
1
ITG
Genome assembly (visualization)
329
hg19
307
GRCh38
Lab
373
AMP-T2D consortium
275
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
649 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
13
52
31
1
pancreatic beta cell
12
13
21
16
1
exocrine cell
39
pancreatic ductal cell
10
13
4
+ See 54 more…
See all biosamples
Download