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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
47
WGBS
16
total RNA-seq
3
Hi-C
Assay category
101
Transcription
48
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
95
May, 2022
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
114
zippedFastqFolder
83
fastq
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
199
Homo sapiens
Biosample type
199
primary cell
Organ
66
epithelium
66
pancreas
Project
199
HPAP
Genome assembly (visualization)
3
hg19
Lab
3555
AMP-T2D consortium
297
Kyle Gaulton, UCSD
199
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
30
audit script error
assay_title!
ATAC-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
199 results
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single cell RNA-seq
snATAC-seq
WGBS
total RNA-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
31
15
1
pancreatic beta cell
16
1
1
pancreatic acinar cell
1
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