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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
18
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
18
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
7
June, 2019
4
February, 2023
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
27
tissue
5
primary cell
Organ
793
pancreas
767
liver
657
connective tissue
483
adipose tissue
421
epithelium
303
heart
279
kidney
270
brain
187
vasculature
181
blood vessel
147
bone element
111
limb
94
artery
93
musculature of body
68
blood
68
bodily fluid
41
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
32
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
2
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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