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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
50
total RNA-seq
ATAC-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
155
DNA binding
52
Transcription
2
3D chromatin structure
1
DNA accessibility
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
187
bam
161
bigWig
141
fastq
106
bed narrowPeak
48
tsv
34
tagAlign
21
bed bed3+
15
bigBed narrowPeak
3
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
217
Homo sapiens
Biosample type
2439
tissue
694
primary cell
619
cell line
217
in vitro differentiated cells
6
stem cell
Organ
79
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
217
AMP
Genome assembly (visualization)
165
hg19
162
GRCh38
4
hg18
Lab
215
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
30
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
month_released!
May, 2021
March, 2020
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
total RNA-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
5
1
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
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