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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
74
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2019
Available data
495
bam
477
bigWig
457
tsv
41
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
540
Homo sapiens
Biosample type
541
tissue
79
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
541
connective tissue
482
adipose tissue
406
pancreas
340
liver
272
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
541
AMP
Genome assembly (visualization)
477
GRCh38
476
hg19
Lab
541
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
month_released!
May, 2021
BIOSAMPLE
ASSAY
541 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
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