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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
40
ChIP-seq
18
snATAC-seq
17
pCHi-C
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
40
DNA binding
18
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
116
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
215
bigWig
186
bam
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
195
Homo sapiens
Biosample type
125
primary cell
42
in vitro differentiated cells
23
tissue
5
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
141
T1D
54
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
2089
AMP-T2D consortium
275
Klaus Kaestner, Upenn
195
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
195 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
37
tissue
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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