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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
11
ChIP-seq
ATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
11
DNA binding
2
DNA accessibility
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
58
February, 2021
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
67
bam
63
bigWig
58
tsv
9
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
71
Homo sapiens
Biosample type
58
cell line
11
tissue
2
primary cell
Organ
762
liver
734
pancreas
654
connective tissue
485
adipose tissue
347
epithelium
337
heart
249
kidney
197
brain
144
vasculature
143
bone element
138
blood vessel
95
musculature of body
71
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
9
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
71
AMP
Genome assembly (visualization)
63
GRCh38
63
hg19
Lab
71
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
October, 2019
February, 2023
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
coronary artery
1
5
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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