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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
200
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1830
Transcription
1618
DNA binding
288
DNA accessibility
97
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
185
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
10
November, 2018
October, 2019
6
August, 2017
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2020
Available data
203
bam
203
bed narrowPeak
203
bigBed narrowPeak
203
bigWig
197
bed broadPeak
197
bigBed broadPeak
196
bed bed3+
41
fastq
21
zippedFastqFolder
1
txt
Organism
287
Homo sapiens
Biosample type
204
tissue
83
primary cell
1
in vitro differentiated cells
Organ
85
kidney
34
musculature of body
33
brain
32
limb
30
heart
20
pancreas
18
ureter
14
epithelium
10
lung
9
connective tissue
8
blood
8
bodily fluid
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
artery
1
spleen
Project
212
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
197
GRCh38
181
hg19
Lab
206
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
288 results
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Clear Filters
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
6
1
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 39 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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