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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
5
total RNA-seq
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
5
Transcription
4
DNA accessibility
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
8
tissue
5
primary cell
Organ
779
pancreas
762
liver
658
connective tissue
485
adipose tissue
387
epithelium
338
heart
249
kidney
197
brain
147
bone element
144
vasculature
138
blood vessel
95
musculature of body
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
13
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
13
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
13
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
October, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
13 results
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Clear Filters
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
1
3
1
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