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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
74
total RNA-seq
43
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
43
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
635
February, 2021
406
August, 2017
406
November, 2017
362
May, 2021
October, 2019
241
May, 2020
183
June, 2019
168
July, 2018
151
August, 2021
123
May, 2022
101
February, 2023
99
May, 2019
94
December, 2017
88
November, 2018
81
July, 2019
76
October, 2018
59
September, 2018
56
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
April, 2019
22
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
57
txt
45
bigWig
39
bam
31
tsv
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
150
Homo sapiens
Biosample type
73
tissue
44
cell line
30
in vitro differentiated cells
4
primary cell
Organ
heart
66
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
151
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
64
Katalin Susztak, Upenn
49
AMP-T2D consortium
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
151 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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