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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
13
Transcription
5
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
25
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
84
bam
67
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
95
Homo sapiens
Biosample type
95
tissue
58
cell line
37
primary cell
Organ
541
connective tissue
482
adipose tissue
443
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
67
GRCh38
67
hg19
Lab
95
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
September, 2020
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
coronary artery
5
1
2
pulmonary artery
2
See all biosamples
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