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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
43
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
565
February, 2021
406
August, 2017
406
November, 2017
291
May, 2021
273
October, 2019
240
August, 2021
237
May, 2020
192
June, 2019
162
July, 2018
123
May, 2022
117
May, 2019
100
February, 2023
100
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
20
November, 2019
19
April, 2020
16
January, 2021
15
October, 2017
9
November, 2020
8
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
2
June, 2018
1
August, 2022
1
March, 2019
Available data
123
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
239
Homo sapiens
Biosample type
165
tissue
41
cell line
30
in vitro differentiated cells
4
primary cell
Organ
92
heart
66
kidney
35
liver
8
embryo
6
blood vessel
6
vasculature
4
epithelium
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
240
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
139
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
240 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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