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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
34
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
34
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
broad histone mark
1
RNA binding protein
Date released
693
February, 2021
356
November, 2017
297
August, 2017
289
May, 2021
241
May, 2020
237
October, 2019
234
August, 2021
210
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
102
July, 2019
88
November, 2018
79
December, 2017
62
May, 2019
60
March, 2020
57
October, 2018
56
September, 2020
49
April, 2018
47
September, 2023
43
April, 2019
42
September, 2018
35
December, 2018
31
February, 2018
29
November, 2019
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
5
October, 2017
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
123
tsv
57
txt
37
bigWig
32
bam
22
bed narrowPeak
17
tagAlign
4
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
233
Homo sapiens
Biosample type
165
tissue
43
cell line
23
in vitro differentiated cells
3
primary cell
Organ
92
heart
66
kidney
33
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
234
AMP
Genome assembly (visualization)
41
hg19
24
GRCh38
Lab
133
AMP-T2D consortium
64
Katalin Susztak, Upenn
35
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
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