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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
163
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
112
histone
112
histone modification
67
broad histone mark
45
narrow histone mark
35
control
16
transcription factor
6
RNA binding protein
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
159
bam
142
bigWig
127
bed narrowPeak
123
tsv
97
bigBed narrowPeak
57
txt
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
362
Homo sapiens
Biosample type
280
tissue
44
cell line
30
in vitro differentiated cells
9
primary cell
Organ
113
heart
71
kidney
56
blood vessel
56
vasculature
35
liver
28
brain
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
3
connective tissue
1
adipose tissue
Project
363
AMP
Genome assembly (visualization)
145
hg19
127
GRCh38
Lab
261
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
363 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
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cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
adipocyte
1
osteoblast
1
primary cell
kidney epithelial cell
5
hepatocyte
4
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