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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
154
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
106
histone
106
histone modification
64
broad histone mark
42
narrow histone mark
33
control
15
transcription factor
5
RNA binding protein
Date released
661
February, 2021
400
November, 2017
380
August, 2017
355
May, 2021
258
October, 2019
241
May, 2020
237
August, 2021
198
June, 2019
135
July, 2018
115
May, 2019
89
July, 2019
88
November, 2018
82
May, 2022
80
April, 2019
75
December, 2017
74
October, 2018
62
February, 2023
56
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
20
November, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
October, 2017
12
September, 2018
9
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
August, 2022
1
March, 2019
1
October, 2022
Available data
150
bam
135
bigWig
123
tsv
120
bed narrowPeak
93
bigBed narrowPeak
57
txt
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
351
Homo sapiens
Biosample type
280
tissue
42
cell line
30
in vitro differentiated cells
Organ
113
heart
71
kidney
56
blood vessel
56
vasculature
35
liver
28
brain
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
3
connective tissue
1
adipose tissue
Project
352
AMP
Genome assembly (visualization)
138
hg19
120
GRCh38
Lab
250
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
352 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
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cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
adipocyte
1
osteoblast
1
See all biosamples
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