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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
120
DNA binding
94
Transcription
2
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
120
bam
97
bed narrowPeak
97
bigBed narrowPeak
97
bigWig
76
fastq
4
tsv
4
txt
Organism
221
Homo sapiens
Biosample type
131
tissue
81
primary cell
6
cell line
4
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
47
pancreas
45
epithelium
28
brain
22
heart
7
limb
7
musculature of body
5
artery
5
kidney
4
bone element
4
connective tissue
4
eye
4
skeleton
Project
134
AMP
76
HPAP
12
T1D
Genome assembly (visualization)
97
hg19
96
GRCh38
Lab
134
AMP-T2D consortium
76
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 14 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
kidney epithelial cell
5
cell line
EndoC_BH1
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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