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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
44
total RNA-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
12
WGBS
8
Hi-C
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
65
Transcription
27
DNA methylation
18
DNA accessibility
8
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
196
bam
176
bigWig
99
bed narrowPeak
99
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
238
Homo sapiens
Biosample type
194
tissue
44
primary cell
Organ
60
vasculature
59
blood vessel
45
brain
42
heart
18
connective tissue
18
epithelium
17
musculature of body
16
kidney
16
pancreas
12
adipose tissue
12
limb
10
liver
8
blood
8
bodily fluid
7
artery
2
pericardium
1
eye
Project
222
AMP
16
T1D
Genome assembly (visualization)
183
hg19
169
GRCh38
Lab
222
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
238 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
snATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 27 more…
primary cell
peripheral blood mononuclear cell
8
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
+ See 21 more…
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