Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
82
single cell RNA-seq
ATAC-seq
41
WGBS
22
snATAC-seq
Assay category
228
Transcription
41
DNA methylation
22
DNA accessibility
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
170
bam
164
bigWig
164
tsv
95
zippedFastqFolder
56
fastq
7
txt
1
bed bed3+
Organism
291
Homo sapiens
Biosample type
148
tissue
143
primary cell
Organ
204
pancreas
74
epithelium
20
liver
2
connective tissue
2
musculature of body
Project
196
AMP
95
HPAP
Genome assembly (visualization)
165
hg19
164
GRCh38
Lab
170
AMP-T2D consortium
95
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
291 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
tissue
islet of Langerhans
126
liver
20
skeletal muscle tissue
1
1
primary cell
Langerhans cell
33
21
pancreatic alpha cell
7
25
pancreatic beta cell
9
16
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 11 more…
See all biosamples
Download