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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
41
DNA methylation
22
DNA accessibility
1
3D chromatin structure
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
7
txt
6
bam
6
fastq
1
bed bed3+
1
hic
Organism
124
Homo sapiens
Biosample type
96
primary cell
28
tissue
2
cell line
2
stem cell
Organ
47
pancreas
41
epithelium
20
liver
2
musculature of body
Project
95
HPAP
28
AMP
4
community
1
ITG
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
128 results
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Clear Filters
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
chondrocytes
1
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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