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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
975
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
1165
Transcription
312
DNA binding
38
DNA methylation
29
DNA accessibility
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
395
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
77
October, 2019
69
July, 2019
47
September, 2023
40
May, 2021
36
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
12
December, 2017
12
February, 2023
9
November, 2018
9
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2019
1
March, 2019
Available data
1785
bam
1671
bigWig
1017
tsv
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1592
Homo sapiens
Biosample type
1595
tissue
631
primary cell
241
in vitro differentiated cells
239
cell line
8
stem cell
Organ
532
connective tissue
473
adipose tissue
361
pancreas
248
liver
bone element
140
heart
135
kidney
69
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
25
eye
20
lung
16
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1511
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
907
hg19
902
GRCh38
Lab
1412
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
9
audit script error
3
inconsistent ontology term
Audit category:
22
missing controlled_by
assay_title!
ATAC-seq
organ_slims!
bone element
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1595 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
298
51
7
4
3
1
4
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
6
1
1
subcutaneous abdominal adipose tissue
35
3
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