Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
849
total RNA-seq
722
ChIP-seq
177
DNase-seq
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
865
Transcription
722
DNA binding
181
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
386
February, 2021
193
May, 2020
184
October, 2019
168
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
58
July, 2019
48
December, 2017
38
May, 2021
26
November, 2018
19
November, 2019
9
March, 2020
8
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
May, 2022
6
September, 2017
Available data
1785
bam
1671
bigWig
1017
tsv
776
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1778
Homo sapiens
Biosample type
1785
tissue
572
cell line
525
primary cell
274
in vitro differentiated cells
3
stem cell
Organ
495
connective tissue
437
adipose tissue
387
pancreas
287
liver
224
brain
128
heart
106
limb
98
kidney
84
blood vessel
84
vasculature
bone element
44
musculature of body
41
nerve
32
artery
23
spleen
18
ureter
3
eye
1
pituitary gland
Project
1783
AMP
2
T1D
Genome assembly (visualization)
1600
GRCh38
1529
hg19
Lab
1779
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
bone element
BIOSAMPLE
ASSAY
1785 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
1
liver
147
122
2
1
body of pancreas
2
35
4
2
2
heart left ventricle
3
34
3
2
+ See 129 more…
See all biosamples
Download