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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
14
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
33
DNA accessibility
14
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
32
June, 2019
11
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
66
Homo sapiens
Biosample type
66
tissue
14
primary cell
Organ
533
connective tissue
474
adipose tissue
427
pancreas
274
heart
270
liver
224
kidney
bone element
143
brain
114
limb
95
blood vessel
95
vasculature
66
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
47
hg19
42
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
bone element
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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