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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
69
total RNA-seq
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
89
DNA binding
27
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
58
February, 2021
57
April, 2019
27
June, 2019
21
May, 2019
18
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
1
February, 2023
Available data
188
bam
171
bigWig
165
tsv
98
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
294
Homo sapiens
Biosample type
234
tissue
58
cell line
2
primary cell
Organ
794
pancreas
768
liver
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
294
AMP
Genome assembly (visualization)
170
GRCh38
167
hg19
Lab
294
AMP-T2D consortium
assay_title!
ATAC-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
294 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
1
1
1
heart
1
14
4
18
1
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
6
1
1
left cardiac atrium
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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