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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
134
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
136
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
122
May, 2021
68
August, 2017
39
February, 2018
30
August, 2021
24
December, 2017
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
250
bam
227
bigWig
129
tsv
122
fastq
93
bed narrowPeak
37
tagAlign
21
bed bed3+
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
328
Homo sapiens
Biosample type
2474
tissue
573
cell line
554
primary cell
328
in vitro differentiated cells
10
stem cell
Organ
80
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
328
AMP
Genome assembly (visualization)
235
hg19
228
GRCh38
4
hg18
Lab
284
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
100
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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