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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
33
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
58
February, 2021
25
October, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
91
bam
82
bigWig
58
tsv
28
bed narrowPeak
24
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
95
Homo sapiens
Biosample type
58
cell line
35
tissue
2
primary cell
Organ
785
pancreas
710
liver
649
connective tissue
480
adipose tissue
413
epithelium
335
heart
279
brain
276
kidney
185
vasculature
180
blood vessel
147
bone element
114
limb
95
artery
95
musculature of body
58
blood
58
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
82
GRCh38
82
hg19
Lab
95
AMP-T2D consortium
assay_title!
ATAC-seq
organ_slims!
pituitary gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
2
coronary artery
1
4
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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