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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
23
DNA binding
6
Transcription
4
DNA accessibility
Target of assay
18
histone
18
histone modification
14
broad histone mark
5
control
4
narrow histone mark
Date released
February, 2021
25
October, 2019
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
29
bam
24
bigWig
22
bed narrowPeak
22
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
31
tissue
2
primary cell
Organ
766
liver
760
pancreas
384
epithelium
267
heart
266
kidney
254
brain
209
connective tissue
107
limb
99
adipose tissue
88
musculature of body
82
vasculature
76
blood vessel
68
blood
68
bodily fluid
42
nerve
37
embryo
33
artery
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
24
GRCh38
24
hg19
Lab
33
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
May, 2019
February, 2021
BIOSAMPLE
ASSAY
33 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
tibial artery
23
2
1
coronary artery
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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