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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
20
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
11
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
78
bam
69
bigWig
58
tsv
15
bed narrowPeak
11
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
82
Homo sapiens
Biosample type
58
cell line
22
tissue
2
primary cell
Organ
726
liver
716
pancreas
615
connective tissue
465
adipose tissue
377
epithelium
269
heart
264
kidney
212
brain
147
bone element
145
vasculature
139
blood vessel
82
artery
80
limb
75
musculature of body
68
blood
68
bodily fluid
33
embryo
33
eye
26
nerve
20
lung
20
spleen
18
ureter
13
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
69
GRCh38
69
hg19
Lab
82
AMP-T2D consortium
assay_title!
ATAC-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
9
2
coronary artery
1
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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