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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
28
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
21
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
Available data
86
bam
77
bigWig
58
tsv
23
bed narrowPeak
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
90
Homo sapiens
Biosample type
58
cell line
30
tissue
2
primary cell
Organ
721
pancreas
708
liver
626
connective tissue
473
adipose tissue
372
epithelium
281
heart
264
kidney
165
brain
164
vasculature
159
blood vessel
147
bone element
99
limb
90
artery
82
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
22
spleen
20
lung
18
ureter
16
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
77
GRCh38
77
hg19
Lab
90
AMP-T2D consortium
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
19
2
coronary artery
1
3
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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