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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
8
January, 2021
8
October, 2019
5
July, 2019
3
February, 2020
Available data
41
bam
41
bigWig
36
bed bed3+
36
bed broadPeak
36
bed narrowPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
48
tissue
8
primary cell
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
8
T1D
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
48
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
56 results
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DNase-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
5
gastrocnemius medialis
1
4
tibial artery
2
1
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primary cell
peripheral blood mononuclear cell
8
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