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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
17
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
October, 2019
Available data
48
bigWig
45
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
Organism
64
Homo sapiens
Biosample type
52
tissue
12
primary cell
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
44
GRCh38
40
hg19
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
64 results
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DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
2
1
1
Ammon's horn
1
1
1
cerebellum (Hemisphere)
1
1
1
caudate nucleus
1
1
+ See 18 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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