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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
24
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
15
October, 2017
14
July, 2019
12
February, 2020
2
March, 2020
Available data
241
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
234
tissue
13
primary cell
Organ
765
pancreas
755
liver
636
connective tissue
479
adipose tissue
400
epithelium
276
heart
247
brain
201
kidney
177
vasculature
173
blood vessel
147
bone element
92
artery
78
limb
68
blood
68
bodily fluid
61
musculature of body
40
nerve
34
embryo
29
eye
23
spleen
20
lung
20
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
247
AMP
Genome assembly (visualization)
183
GRCh38
138
hg19
Lab
247
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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