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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
124
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
96
histone
96
histone modification
84
narrow histone mark
31
control
12
broad histone mark
Date released
85
October, 2019
28
November, 2017
16
July, 2019
12
February, 2020
9
October, 2017
3
May, 2019
2
March, 2020
Available data
241
bam
220
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
155
Homo sapiens
Biosample type
145
tissue
10
primary cell
Organ
725
pancreas
635
connective tissue
477
adipose tissue
411
liver
367
epithelium
212
heart
175
kidney
155
brain
147
bone element
107
vasculature
105
blood vessel
71
artery
48
musculature of body
37
embryo
30
limb
27
eye
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
98
hg19
89
GRCh38
Lab
155
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
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