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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
17
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
October, 2017
Available data
241
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
164
Homo sapiens
Biosample type
143
tissue
21
primary cell
Organ
775
pancreas
682
liver
637
connective tissue
477
adipose tissue
414
epithelium
300
heart
279
kidney
184
vasculature
178
blood vessel
164
brain
147
bone element
114
limb
90
artery
80
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
133
GRCh38
120
hg19
Lab
164
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
frontal cortex
2
2
1
1
+ See 55 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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