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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
33
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
15
October, 2017
6
July, 2019
2
November, 2018
Available data
241
bam
220
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
256
Homo sapiens
Biosample type
238
tissue
18
primary cell
Organ
594
liver
379
pancreas
266
epithelium
256
brain
255
kidney
181
connective tissue
138
heart
122
vasculature
116
blood vessel
107
limb
89
bone element
86
musculature of body
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
28
eye
23
embryo
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
256
AMP
Genome assembly (visualization)
203
GRCh38
151
hg19
Lab
256
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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