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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
86
Transcription
33
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
142
February, 2021
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
4
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
299
bam
278
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
20
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
429
Homo sapiens
Biosample type
407
tissue
22
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
428
AMP
1
T1D
Genome assembly (visualization)
273
GRCh38
221
hg19
Lab
428
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
429 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 81 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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