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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
55
Transcription
53
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
41
May, 2022
40
February, 2023
16
September, 2020
8
July, 2019
6
February, 2021
6
November, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
March, 2020
1
November, 2019
Available data
bam
267
bigWig
225
fastq
155
tsv
115
bed narrowPeak
54
bigBed narrowPeak
41
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
127
Homo sapiens
Biosample type
115
primary cell
10
cell line
3
tissue
Organ
170
pancreas
135
kidney
128
epithelium
107
heart
90
liver
89
bone element
71
connective tissue
46
adipose tissue
41
brain
38
musculature of body
26
eye
20
lung
16
vasculature
15
blood vessel
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
103
HPAP
25
AMP
Genome assembly (visualization)
14
hg19
Lab
103
Klaus Kaestner, Upenn
19
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
5
audit script error
assay_title!
ATAC-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
128 results
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Clear Filters
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
42
31
1
pancreatic beta cell
11
16
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
+ See 9 more…
cell line
EndoC_BH1
1
6
2
1
tissue
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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