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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
25
ChIP-seq
19
total RNA-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
25
DNA binding
19
Transcription
5
DNA accessibility
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
20
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
March, 2020
Available data
30
bam
23
fastq
21
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
52
tissue
5
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
21
GRCh38
20
hg19
Lab
57
AMP-T2D consortium
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
spleen
20
1
1
2
islet of Langerhans
2
14
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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