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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
22
ChIP-seq
19
total RNA-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
22
DNA binding
19
Transcription
7
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
41
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
March, 2020
Available data
27
bam
21
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
55
Homo sapiens
Biosample type
28
tissue
27
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
2
14
4
retina
3
3
pigmented layer of retina
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
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