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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
19
Transcription
4
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
6
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
6
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
785
pancreas
710
liver
649
connective tissue
480
adipose tissue
413
epithelium
300
heart
279
brain
276
kidney
185
vasculature
180
blood vessel
147
bone element
114
limb
95
artery
95
musculature of body
58
blood
58
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
32
AMP-T2D consortium
assay_title!
ATAC-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
2
1
1
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