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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
125
Transcription
88
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
78
June, 2019
66
August, 2021
47
September, 2023
11
July, 2019
9
October, 2019
8
February, 2021
3
December, 2019
3
May, 2023
2
March, 2020
Available data
92
bam
92
bigWig
80
bed narrowPeak
80
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
227
Homo sapiens
Biosample type
197
tissue
21
primary cell
9
cell line
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
180
AMP
47
KPMP
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
111
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
assay_title!
ATAC-seq
ChIP-seq
BIOSAMPLE
ASSAY
227 results
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DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
64
49
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
kidney tubule cell
3
1
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
+ See 1 more…
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