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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
63
October, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
106
bam
89
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
78
Homo sapiens
Biosample type
78
tissue
Organ
787
pancreas
705
liver
650
connective tissue
483
adipose tissue
399
epithelium
276
heart
244
brain
201
kidney
173
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
68
blood
68
bodily fluid
62
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
20
lung
18
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
78
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
5
tibial artery
23
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
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